If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ), 'gf_id' => 'HOM05D000825', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000825' ), 'data_identifier' => 'HOM05D000825', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000825', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41100' => 'bna', 'A01p41130' => 'bna', 'A01p41180' => 'bna', 'A02p35290' => 'bna', 'A04p08890' => 'bna', 'A05p43370' => 'bna', 'A06p42340' => 'bna', 'A07p12080' => 'bna', 'A08p26540' => 'bna', 'A09p38720' => 'bna', 'A10p21310' => 'bna', 'A10p24210' => 'bna', 'Aa31LG11G11380' => 'aar', 'Aa31LG11G15070' => 'aar', 'Aa31LG2G5290' => 'aar', 'Aa31LG2G6380' => 'aar', 'Aa31LG5G14560' => 'aar', 'Aa31LG7G9720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3396' => 'aag', 'Actinidia05933' => 'ach', 'Actinidia08089' => 'ach', 'Actinidia22090' => 'ach', 'Actinidia22091' => 'ach', 'Actinidia25600' => 'ach', 'Actinidia25758' => 'ach', 'Actinidia25759' => 'ach', 'Actinidia30563' => 'ach', 'Actinidia30677' => 'ach', 'Actinidia33259' => 'ach', 'Actinidia33260' => 'ach', 'Ah.06g195630' => 'amhyb', 'Ah.13g075290' => 'amhyb', 'Ah.13g075300' => 'amhyb', 'Ah.13g075310' => 'amhyb', 'AL1G40560' => 'aly', 'AL3G13890' => 'aly', 'AL3G13910' => 'aly', 'AL5G14610' => 'aly', 'AL5G16450' => 'aly', 'AL6G24965' => 'aly', 'AL6G29420' => 'aly', 'AL7G32330' => 'aly', 'AL9U10860' => 'aly', 'Aqoxy1G00497' => 'aox', 'Aqoxy2G00560' => 'aox', 'Aqoxy5G03522' => 'aox', 'Aqoxy5G03524' => 'aox', 'Aqoxy7G03701' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40PBNN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PC8HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KI1S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AITI1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6G01Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBD1JU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S8KTUY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VLF0GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y46Q6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI114N' => 'arhy', 'AT1G24360' => 'ath', 'AT3G03980' => 'ath', 'AT3G04000' => 'ath', 'AT3G25950' => 'ath', 'AT3G27270' => 'ath', 'AT4G13180' => 'ath', 'AT5G14285' => 'ath', 'AT5G18210' => 'ath', 'ATR0686G235' => 'atr', 'ATR0697G088' => 'atr', 'ATR0706G025' => 'atr', 'ATR0743G122' => 'atr', 'Atru.chr11.2242' => 'acertr', 'Atru.chr11.2243' => 'acertr', 'Atru.chr11.2257' => 'acertr', 'Atru.chr11.2258' => 'acertr', 'Atru.chr2.1322' => 'acertr', 'Atru.chr2.1326' => 'acertr', 'Atru.chr2.1328' => 'acertr', 'Atru.chr2.1329_Atru.chr2.1330' => 'acertr', 'Atru.chr2.1353' => 'acertr', 'Atru.chr2.1356' => 'acertr', 'Atru.chr2.1373' => 'acertr', 'Atru.chr2.1376' => 'acertr', 'Atru.chr6.2498' => 'acertr', 'AUR62005569' => 'cqu', 'AUR62024161' => 'cqu', 'AUR62025864' => 'cqu', 'AUR62026091' => 'cqu', 'AUR62029827' => 'cqu', 'AUR62032065' => 'cqu', 'AUR62032066' => 'cqu', 'AUR62032068' => 'cqu', 'AUR62032072' => 'cqu', 'AUR62032675' => 'cqu', 'AUR62032682' => 'cqu', 'BcaB03g12061' => 'bca', 'BcaB03g16142' => 'bca', 'BcaB05g22689' => 'bca', 'BcaB06g26205' => 'bca', 'BcaB07g30171' => 'bca', 'BcaB08g36972' => 'bca', 'BcaB08g36979' => 'bca', 'BcaC01g01642' => 'bca', 'BcaC02g09441' => 'bca', 'BcaC03g13503' => 'bca', 'BcaC03g17452' => 'bca', 'BcaC04g18716' => 'bca', 'BcaC04g19048' => 'bca', 'BcaC05g26533' => 'bca', 'BcaC05g26726' => 'bca', 'BcaC05g30235' => 'bca', 'BcaC05g30236' => 'bca', 'BcaC05g30301' => 'bca', 'BcaC06g31101' => 'bca', 'BcaC06g33935' => 'bca', 'BcaC06g35260' => 'bca', 'BcaC09g47771' => 'bca', 'BcaNung03168' => 'bca', 'BcaNung04534' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00530' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00580' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00600' => 'bna', 'BolC1t05782H' => 'bol', 'BolC1t05787H' => 'bol', 'BolC2t06608H' => 'bol', 'BolC2t11465H' => 'bol', 'BolC3t19643H' => 'bol', 'BolC5t31308H' => 'bol', 'BolC5t34313H' => 'bol', 'BolC5t34959H' => 'bol', 'BolC7t42312H' => 'bol', 'BolC7t44032H' => 'bol', 'BolC9t58719H' => 'bol', 'BolC9t59127H' => 'bol', 'BraA01t04544Z' => 'bra', 'BraA02t08532Z' => 'bra', 'BraA05t23076Z' => 'bra', 'BraA06t27149Z' => 'bra', 'BraA07t28996Z' => 'bra', 'BraA08t34606Z' => 'bra', 'BraA09t39380Z' => 'bra', 'BraA10t44194Z' => 'bra', 'BraA10t44486Z' => 'bra', 'C02p06660' => 'bna', 'C02p54000' => 'bna', 'C03p73480' => 'bna', 'C04p42770' => 'bna', 'C05p25890' => 'bna', 'C05p56480' => 'bna', 'C05p63070' => 'bna', 'C07p18020' => 'bna', 'C07p35000' => 'bna', 'C09p58770' => 'bna', 'C09p62900' => 'bna', 'CAN.G1046.6' => 'can', 'CAN.G1315.5' => 'can', 'CAN.G352.46' => 'can', 'CAN.G628.42' => 'can', 'CAN.G628.44' => 'can', 'CAN.G65.119' => 'can', 'CANSAT01G0340' => 'cansat', 'CANSAT01G3063' => 'cansat', 'CANSAT64G2780' => 'cansat', 'CANSAT78G0766' => 'cansat', 'CANSAT78G1525' => 'cansat', 'CANSAT78G1851' => 'cansat', 'CARHR026740' => 'chi', 'CARHR078120' => 'chi', 'CARHR146940' => 'chi', 'CARHR148530' => 'chi', 'CARHR194850' => 'chi', 'CARHR199050' => 'chi', 'CARHR218640' => 'chi', 'Carub.0001s2571' => 'cru', 'Carub.0003s0323' => 'cru', 'Carub.0003s0325' => 'cru', 'Carub.0005s0381' => 'cru', 'Carub.0005s0552' => 'cru', 'Carub.0006s1248' => 'cru', 'Carub.0006s1649' => 'cru', 'Carub.0007s2952' => 'cru', 'Ca_04493_v3' => 'car', 'Ca_08565_v3' => 'car', 'Ca_08566_v3' => 'car', 'Ca_16484_v3' => 'car', 'Ca_25816_v3' => 'car', 'CBR_g38957' => 'cbr', 'CBR_g66816' => 'cbr', 'Cc00_g30330' => 'ccan', 'Cc06_g22850' => 'ccan', 'Cc06_g22860' => 'ccan', 'Cc07_g00510' => 'ccan', 'Cc11_g16570' => 'ccan', 'Cc11_g16580' => 'ccan', 'CDE09G0822' => 'cde', 'Cfa007265' => 'cfa', 'Cfa009313' => 'cfa', 'Cfa016435' => 'cfa', 'Cfa017661' => 'cfa', 'Cfa018871' => 'cfa', 'Cfa021980' => 'cfa', 'Cfa022857' => 'cfa', 'Cfa023265' => 'cfa', 'Cfa023916' => 'cfa', 'Ciclev10016456m.g' => 'ccl', 'Ciclev10023632m.g' => 'ccl', 'Ciclev10023854m.g' => 'ccl', 'Ciclev10024514m.g' => 'ccl', 'Ciclev10024548m.g' => 'ccl', 'Ciclev10032120m.g' => 'ccl', 'Ciclev10032558m.g' => 'ccl', 'CiPaw.03G051400' => 'cil', 'CiPaw.04G034000' => 'cil', 'CiPaw.05G115600' => 'cil', 'CiPaw.05G115700' => 'cil', 'CiPaw.05G144700' => 'cil', 'CiPaw.06G099600' => 'cil', 'CiPaw.12G036600' => 'cil', 'ClCG04G005260' => 'cla', 'ClCG05G013260' => 'cla', 'ClCG08G017320' => 'cla', 'ClCG11G013900' => 'cla', 'COL.COLO4_00413' => 'col', 'COL.COLO4_13613' => 'col', 'COL.COLO4_13614' => 'col', 'COL.COLO4_13615' => 'col', 'COL.COLO4_23618' => 'col', 'COL.COLO4_23619' => 'col', 'COL.COLO4_25195' => 'col', 'COL.COLO4_29293' => 'col', 'Cpa.g.c36007' => 'cpa', 'Cpa.g.sc43.9' => 'cpa', 'Cpa.g.sc51.99' => 'cpa', 'CsaV3_2G025310' => 'csa', 'CsaV3_3G027280' => 'csa', 'CsaV3_3G043300' => 'csa', 'CsaV3_4G013330' => 'csa', 'CsaV3_5G030510' => 'csa', 'CSS0001685' => 'camsi', 'CSS0004617' => 'camsi', 'CSS0005498' => 'camsi', 'CSS0007515' => 'camsi', 'CSS0014657' => 'camsi', 'CSS0016665' => 'camsi', 'CSS0018664' => 'camsi', 'CSS0019878' => 'camsi', 'CSS0033951' => 'camsi', 'CSS0036031' => 'camsi', 'CSS0041807' => 'camsi', 'CSS0042145' => 'camsi', 'CSS0049675' => 'camsi', 'DCAR_007016' => 'dca', 'DCAR_016868' => 'dca', 'DCAR_021760' => 'dca', 'DCAR_026480' => 'dca', 'DCAR_026481' => 'dca', 'Dinv11101' => 'din', 'Dinv14797' => 'din', 'Dinv25685' => 'din', 'Dinv37009' => 'din', 'Duzib128G0256' => 'dzi', 'Duzib128G0749' => 'dzi', 'Duzib128G1217' => 'dzi', 'Duzib128G1768' => 'dzi', 'Duzib128G1900' => 'dzi', 'Duzib147G0600' => 'dzi', 'Duzib187G1246' => 'dzi', 'Duzib248G1423' => 'dzi', 'Duzib251G0166' => 'dzi', 'Duzib251G0887' => 'dzi', 'Duzib268G0015' => 'dzi', 'Duzib268G0854' => 'dzi', 'Duzib268G0933' => 'dzi', 'Duzib268G1792' => 'dzi', 'ECA233G1149' => 'eca', 'ECA233G2301' => 'eca', 'ECA233G5659' => 'eca', 'ECA233G6063' => 'eca', 'ECA246G2022' => 'eca', 'EL10Ac3g06810' => 'bvu', 'EL10Ac3g06811' => 'bvu', 'EL10Ac6g13435' => 'bvu', 'EL10Ac6g13436' => 'bvu', 'EL10As4g23463' => 'bvu', 'Eucgr.A02088' => 'egr', 'Eucgr.A02089' => 'egr', 'Eucgr.B03459' => 'egr', 'Eucgr.B03460' => 'egr', 'Eucgr.H04666' => 'egr', 'Eucgr.J02304' => 'egr', 'Eucgr.K01486' => 'egr', 'Eucgr.K01487' => 'egr', 'Eucgr.K01488' => 'egr', 'Eucgr.K01489' => 'egr', 'Eucgr.K01490' => 'egr', 'Eucgr.K01492' => 'egr', 'FAN02G3782' => 'fan', 'FAN04G3121' => 'fan', 'FAN05G0249' => 'fan', 'FAN07G0389' => 'fan', 'FAN07G2829' => 'fan', 'FAN12G2056' => 'fan', 'FAN12G2870' => 'fan', 'FAN12G3978' => 'fan', 'FAN13G1781' => 'fan', 'FAN17G0127' => 'fan', 'FAN17G1290' => 'fan', 'FAN18G1122' => 'fan', 'FAN22G0036' => 'fan', 'FAN22G1830' => 'fan', 'FAN25G2037' => 'fan', 'FvH4_4g13260' => 'fve', 'FvH4_4g24340' => 'fve', 'FvH4_4g24350' => 'fve', 'FvH4_5g07680' => 'fve', 'FvH4_6g52910' => 'fve', 'Glyma.05G073901' => 'gma', 'Glyma.08G102100' => 'gma', 'Glyma.11G248000' => 'gma', 'Glyma.16G042000' => 'gma', 'Glyma.16G062400' => 'gma', 'Glyma.18G009200' => 'gma', 'Glyma.19G076700' => 'gma', 'Glyma.19G084400' => 'gma', 'Gohir.A03G128800' => 'ghi', 'Gohir.A04G138600' => 'ghi', 'Gohir.A05G311300' => 'ghi', 'Gohir.A09G033700' => 'ghi', 'Gohir.A11G258400' => 'ghi', 'Gohir.D02G152600' => 'ghi', 'Gohir.D04G181500' => 'ghi', 'Gohir.D05G312200' => 'ghi', 'Gohir.D09G034300' => 'ghi', 'Gohir.D11G268400' => 'ghi', 'Gohir.D12G151800' => 'ghi', 'Gorai.005G171600' => 'gra', 'Gorai.006G039300' => 'gra', 'Gorai.007G288200' => 'gra', 'Gorai.008G164200' => 'gra', 'Gorai.009G333600' => 'gra', 'Gorai.012G174800' => 'gra', 'GSVIVG01001837001' => 'vvi', 'GSVIVG01008491001' => 'vvi', 'GSVIVG01010352001' => 'vvi', 'GSVIVG01010353001' => 'vvi', 'GSVIVG01033387001' => 'vvi', 'GSVIVG01033388001' => 'vvi', 'HanXRQChr02g0054121' => 'han', 'HanXRQChr02g0054131' => 'han', 'HanXRQChr08g0207471' => 'han', 'HanXRQChr09g0255951' => 'han', 'HanXRQChr10g0318431' => 'han', 'HanXRQChr13g0398061' => 'han', 'HanXRQChr15g0474691' => 'han', 'HanXRQChr17g0536131' => 'han', 'Haze_07255' => 'cav', 'Haze_12367' => 'cav', 'Haze_14823' => 'cav', 'Haze_19410' => 'cav', 'Hma1.2p1_0014F.1_g009810' => 'hma', 'Hma1.2p1_0167F.1_g073820' => 'hma', 'Hma1.2p1_0279F.1_g112350' => 'hma', 'Hma1.2p1_0417F.1_g148820' => 'hma', 'Hma1.2p1_0860F.1_g229510' => 'hma', 'Hma1.2p1_3767F.1_g337530' => 'hma', 'HPP92_001904' => 'vpl', 'HPP92_006246' => 'vpl', 'HPP92_023509' => 'vpl', 'Hund02418' => 'sun', 'Hund06063' => 'sun', 'Hund08109' => 'sun', 'Hund24840' => 'sun', 'Hund29975' => 'sun', 'Lalb_Chr06g0173941' => 'lal', 'Lalb_Chr07g0187311' => 'lal', 'Lalb_Chr14g0363141' => 'lal', 'Lalb_Chr14g0364441' => 'lal', 'Lalb_Chr22g0359281' => 'lal', 'Lalb_Chr23g0277951' => 'lal', 'Lalb_Chr24g0403391' => 'lal', 'Lj1g0005192' => 'lja', 'Lj1g0005346' => 'lja', 'Lj1P1137T36' => 'lonja', 'Lj2A357T93' => 'lonja', 'Lj3A1064T101' => 'lonja', 'Lj4g0003159' => 'lja', 'Lj6C821G11' => 'lonja', 'Lj6g0005936' => 'lja', 'Lj7A607G33' => 'lonja', 'Lj9C476G5' => 'lonja', 'Lju41C49G5' => 'lonja', 'Lsat_1_v5_gn_0_20321' => 'lsa', 'Lsat_1_v5_gn_0_8520' => 'lsa', 'Lsat_1_v5_gn_2_59220' => 'lsa', 'Lsat_1_v5_gn_3_109881' => 'lsa', 'Lsat_1_v5_gn_3_35500' => 'lsa', 'Lsat_1_v5_gn_3_35520' => 'lsa', 'Lsat_1_v5_gn_3_54141' => 'lsa', 'Lsat_1_v5_gn_3_99640' => 'lsa', 'Lsat_1_v5_gn_4_185580' => 'lsa', 'Lsat_1_v5_gn_4_77900' => 'lsa', 'Lsat_1_v5_gn_6_36801' => 'lsa', 'Lsat_1_v5_gn_6_36821' => 'lsa', 'Lsat_1_v5_gn_6_75680' => 'lsa', 'Lsat_1_v5_gn_7_11101' => 'lsa', 'Lsat_1_v5_gn_8_150181' => 'lsa', 'Manes.09G142200' => 'mes', 'Manes.12G014900' => 'mes', 'Manes.12G015000' => 'mes', 'Manes.12G015100' => 'mes', 'Manes.13G015500' => 'mes', 'Manes.15G157200' => 'mes', 'Manes.16G048001' => 'mes', 'Mapoly0002s0009' => 'mpo', 'Mapoly0073s0047' => 'mpo', 'Mapoly0135s0032' => 'mpo', 'Mapoly0148s0041' => 'mpo', 'MBI05_g07870_MAGBIO' => 'mbi', 'MBI11_g00919_MAGBIO' => 'mbi', 'MBI11_g21376_MAGBIO' => 'mbi', 'MBI11_g44722_MAGBIO' => 'mbi', 'MBI19_g44427_MAGBIO' => 'mbi', 'MCO01G697' => 'mco', 'MD03G1214200' => 'mdo', 'MD09G1016200' => 'mdo', 'MD13G1111900' => 'mdo', 'MD13G1112000' => 'mdo', 'MD14G1002100' => 'mdo', 'MD14G1162300' => 'mdo', 'MD16G1111500' => 'mdo', 'MD16G1111600' => 'mdo', 'MD17G1016700' => 'mdo', 'Medtr1g068955' => 'mtr', 'Medtr3g085740' => 'mtr', 'Medtr3g101040' => 'mtr', 'Medtr5g022330' => 'mtr', 'Medtr5g022340' => 'mtr', 'Medtr6g081270' => 'mtr', 'Medtr7g094510' => 'mtr', 'Medtr7g094520' => 'mtr', 'Medtr8g088140' => 'mtr', 'Medtr8g088170' => 'mtr', 'MELO3C008796.2' => 'cme', 'MELO3C010727.2' => 'cme', 'MELO3C011890.2' => 'cme', 'MELO3C014858.2' => 'cme', 'MELO3C026891.2' => 'cme', 'Migut.B01080' => 'egut', 'Migut.H00018' => 'egut', 'Migut.J01874' => 'egut', 'Migut.K00014' => 'egut', 'Migut.K00696' => 'egut', 'MSTRG.13323' => 'ama', 'MSTRG.24075' => 'ama', 'MSTRG.26072' => 'ama', 'MSTRG.525' => 'ama', 'MSTRG.7978' => 'ama', 'Nitab4.5_0000001g0060' => 'nta', 'Nitab4.5_0000040g0460' => 'nta', 'Nitab4.5_0000240g0040' => 'nta', 'Nitab4.5_0000240g0050' => 'nta', 'Nitab4.5_0000271g0080' => 'nta', 'Nitab4.5_0000581g0090' => 'nta', 'Nitab4.5_0000581g0100' => 'nta', 'Nitab4.5_0000615g0040' => 'nta', 'Nitab4.5_0001664g0110' => 'nta', 'Nitab4.5_0002825g0040' => 'nta', 'Nitab4.5_0005327g0030' => 'nta', 'Nitab4.5_0008789g0010' => 'nta', 'Nitab4.5_0008861g0010' => 'nta', 'Nitab4.5_0009657g0010' => 'nta', 'Nitab4.5_0011584g0010' => 'nta', 'Nitab4.5_0026423g0010' => 'nta', 'Nn2g15881' => 'nnu', 'Nn2g15882' => 'nnu', 'Nn3g16546' => 'nnu', 'Nn3g16547' => 'nnu', 'Nn4g22413' => 'nnu', 'Nn4g22416' => 'nnu', 'Nn4g23412' => 'nnu', 'Nn8g39943' => 'nnu', 'Oeu020313.1' => 'oeu', 'Oeu035806.1' => 'oeu', 'Oeu038668.1' => 'oeu', 'Oeu039929.1' => 'oeu', 'Oeu041688.5' => 'oeu', 'Oeu050428.1' => 'oeu', 'Oeu058764.1' => 'oeu', 'Os02g0503500' => 'osa', 'Os04g0376300' => 'osa', 'Os05g0302600' => 'osa', 'Os07g0170000' => 'osa', 'Os07g0170016' => 'osa', 'Os07g0561500' => 'osa', 'Os12g0242700' => 'osa', 'Os12g0242800' => 'osa', 'Peaxi162Scf00076g00107' => 'pax', 'Peaxi162Scf00080g00187' => 'pax', 'Peaxi162Scf00089g00334' => 'pax', 'Peaxi162Scf00128g00834' => 'pax', 'Peaxi162Scf00763g00326' => 'pax', 'PGR042G1956' => 'pgr', 'PGR083G2872' => 'pgr', 'PGR102G1594' => 'pgr', 'PGR102G2248' => 'pgr', 'PGR142G0599' => 'pgr', 'PGR142G2184' => 'pgr', 'PGR142G2447' => 'pgr', 'PGR142G3507' => 'pgr', 'PGSC0003DMG400005846' => 'stu', 'PGSC0003DMG400006972' => 'stu', 'PGSC0003DMG400017458' => 'stu', 'PGSC0003DMG400017459' => 'stu', 'PGSC0003DMG400033099' => 'stu', 'PGSC0003DMG400033100' => 'stu', 'PGSC0003DMG401026981' => 'stu', 'Phvul.001G109700' => 'pvu', 'Phvul.001G259400' => 'pvu', 'Phvul.004G056600' => 'pvu', 'Phvul.008G150000' => 'pvu', 'Potri.001G335100' => 'ptr', 'Potri.008G178700' => 'ptr', 'Potri.008G178800' => 'ptr', 'Potri.010G056000' => 'ptr', 'Potri.010G056100' => 'ptr', 'Potri.013G059000' => 'ptr', 'Potri.013G059100' => 'ptr', 'Potri.019G033500' => 'ptr', 'Potri.019G033600' => 'ptr', 'Pp3c12_15820' => 'ppa', 'Pp3c13_17450' => 'ppa', 'Pp3c18_20230' => 'ppa', 'Pp3c19_3790' => 'ppa', 'Pp3c21_3670' => 'ppa', 'Pp3c3_27560' => 'ppa', 'Pp3c4_11220' => 'ppa', 'Pp3s30_110' => 'ppa', 'PRCOL_00005071' => 'pco', 'PRCOL_00006078' => 'pco', 'Prupe.1G233400' => 'ppe', 'Prupe.1G233600' => 'ppe', 'Prupe.2G103500' => 'ppe', 'Prupe.3G006500' => 'ppe', 'Prupe.3G301200' => 'ppe', 'Prupe.5G154900' => 'ppe', 'Prupe.8G053700' => 'ppe', 'Psat0s2968g0080' => 'psa', 'Psat3g063480' => 'psa', 'Psat5g094480' => 'psa', 'PSO017G6123' => 'pso', 'PSO063G2104' => 'pso', 'PSO063G2807' => 'pso', 'PSO063G4496' => 'pso', 'PSO782G3128' => 'pso', 'PSO782G3575' => 'pso', 'QL02p072697' => 'qlo', 'QL03p017710' => 'qlo', 'QL03p054773' => 'qlo', 'QL03p054799' => 'qlo', 'QL07p020107' => 'qlo', 'QL07p020172' => 'qlo', 'QL10p004737' => 'qlo', 'RcHm_v2.0_Chr2g0174621' => 'rch', 'RcHm_v2.0_Chr3g0497441' => 'rch', 'RcHm_v2.0_Chr4g0431201' => 'rch', 'RcHm_v2.0_Chr4g0431211' => 'rch', 'RcHm_v2.0_Chr7g0190791' => 'rch', 'Rhsim03G0000700' => 'rsi', 'Rhsim03G0000800' => 'rsi', 'Rhsim09G0004900' => 'rsi', 'Rhsim10G0010000' => 'rsi', 'Rhsim12G0035300' => 'rsi', 'Rhsim12G0105500' => 'rsi', 'Rhsim12G0105600' => 'rsi', 'Rhsim12G0172600' => 'rsi', 'Sabra08G0136400' => 'sbr', 'Sabra09G0093200' => 'sbr', 'Sabra10G0049100' => 'sbr', 'Sabra13G0052500' => 'sbr', 'Sabra13G0052600' => 'sbr', 'Sabra19G0041500' => 'sbr', 'SalBow1G2359' => 'sbo', 'SalBow1G2383' => 'sbo', 'SalBow2G2039' => 'sbo', 'SalBow2G3549' => 'sbo', 'SalBow6G2167' => 'sbo', 'SalBow7G3815' => 'sbo', 'SalBow8G4626' => 'sbo', 'Sc03g0006850' => 'sci', 'Sc03g0006950' => 'sci', 'Sc04g0009930' => 'sci', 'Sc06g0007460' => 'sci', 'Sc06g0007470' => 'sci', 'Sc06g0007480' => 'sci', 'Sc06g0007490' => 'sci', 'Sc06g0007500' => 'sci', 'Sc06g0007510' => 'sci', 'Sc06g0007520' => 'sci', 'Sc22g0004170' => 'sci', 'Sc25g0004970' => 'sci', 'Sed0002703' => 'sed', 'Sed0006825' => 'sed', 'Sed0011399' => 'sed', 'Sed0016345' => 'sed', 'Sed0016556' => 'sed', 'Sed0016598' => 'sed', 'SEGI_04659' => 'sgi', 'SEGI_05609' => 'sgi', 'SEGI_06016' => 'sgi', 'SEGI_06488' => 'sgi', 'SEGI_10834' => 'sgi', 'SEGI_19369' => 'sgi', 'SEGI_23385' => 'sgi', 'SEGI_24959' => 'sgi', 'SEGI_24996' => 'sgi', 'SEGI_31711' => 'sgi', 'SEGI_32283' => 'sgi', 'SEGI_37998' => 'sgi', 'SEGI_39033' => 'sgi', 'SGA_v2.0_scaffold105G30513' => 'sas', 'SGA_v2.0_scaffold135G34960' => 'sas', 'SGA_v2.0_scaffold391G50641' => 'sas', 'SGA_v2.0_scaffold69G23035' => 'sas', 'SMO089G0006' => 'smo', 'SMO115G0340' => 'smo', 'SMO147G0307' => 'smo', 'SMO351G0267' => 'smo', 'SMO351G0389' => 'smo', 'Solyc02g068010.4' => 'sly', 'Solyc03g111060.3' => 'sly', 'Solyc03g111070.3' => 'sly', 'Solyc03g111080.3' => 'sly', 'Solyc05g014550.1' => 'sly', 'Solyc05g014560.3' => 'sly', 'Solyc06g071060.1' => 'sly', 'Solyc06g071070.1' => 'sly', 'Solyc06g071910.3' => 'sly', 'Solyc08g008430.4' => 'sly', 'Sopen02g017140' => 'spe', 'Sopen03g030230' => 'spe', 'Sopen05g009600' => 'spe', 'Sopen05g009610' => 'spe', 'Sopen06g027360' => 'spe', 'Sopen06g027370' => 'spe', 'Sopen06g028190' => 'spe', 'Sopen08g004300' => 'spe', 'Sp1g23410' => 'spa', 'Sp2g15180' => 'spa', 'Sp2g16410' => 'spa', 'Sp3g02950' => 'spa', 'Sp3g02970' => 'spa', 'Sp6g26110' => 'spa', 'Sp6g29750' => 'spa', 'TAR371G0583' => 'tar', 'TAR374G0731' => 'tar', 'TAR374G0756' => 'tar', 'TAR622G1438' => 'tar', 'TAR623G0134' => 'tar', 'TAR629G1450' => 'tar', 'TAR629G1558' => 'tar', 'TAR633G0342' => 'tar', 'THA.LOC104805760' => 'tha', 'THA.LOC104807673' => 'tha', 'THA.LOC104807894' => 'tha', 'THA.LOC104823970' => 'tha', 'THA.LOC104825693' => 'tha', 'THA.LOC104827269' => 'tha', 'Thecc.02G274000' => 'tca', 'Thecc.02G274100' => 'tca', 'Thecc.04G029000' => 'tca', 'Thecc.05G293300' => 'tca', 'Thecc.05G293400' => 'tca', 'Thhalv10004816m.g' => 'esa', 'Thhalv10005332m.g' => 'esa', 'Thhalv10008222m.g' => 'esa', 'Thhalv10014401m.g' => 'esa', 'Thhalv10014472m.g' => 'esa', 'Thhalv10021320m.g' => 'esa', 'TPR.G18127' => 'tpr', 'TPR.G22432' => 'tpr', 'TPR.G32804' => 'tpr', 'TPR.G35679' => 'tpr', 'TPR.G6761' => 'tpr', 'TWI18G0764' => 'twi', 'TWI34G1055' => 'twi', 'TWI36G0189' => 'twi', 'TWI36G0924' => 'twi', 'TWI36G1132' => 'twi', 'TWI60G0180' => 'twi', 'unitig_22.g6414' => 'ugi', 'unitig_52.g17647' => 'ugi', 'unitig_62.g23366' => 'ugi', 'unitig_746.g26798' => 'ugi', 'unitig_8.g2910' => 'ugi', 'unitig_8.g3454' => 'ugi', 'vmacro01087' => 'vma', 'vmacro12573' => 'vma', 'vmacro12574' => 'vma', 'vmacro12575' => 'vma', 'vmacro12576' => 'vma', 'vmacro16135' => 'vma', 'vmacro16653' => 'vma', 'vmacro16661' => 'vma', 'vmacro16715' => 'vma', 'VMungo0251G1429' => 'vmu', 'VMungo0464G1017' => 'vmu', 'VMungo1383G1969' => 'vmu', 'VMungo1383G2063' => 'vmu', 'VMungo1383G3286' => 'vmu', 'Zm00001eb029560' => 'zma', 'Zm00001eb046850' => 'zma', 'Zm00001eb061940' => 'zma', 'Zm00001eb086000' => 'zma', 'Zm00001eb192490' => 'zma', 'Zm00001eb212410' => 'zma', 'Zm00001eb241560' => 'zma', 'Zm00001eb300950' => 'zma', 'Zm00001eb309910' => 'zma', 'Zm00001eb387330' => 'zma', 'Zm00001eb420880' => 'zma' ) $gf_id = 'HOM05D000825' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000825' ) $data_identifier = 'HOM05D000825' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 13, 'cqu' => (int) 11, 'bca' => (int) 24, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 7, 'lja' => (int) 4, 'lonja' => (int) 7, 'lsa' => (int) 15, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 9, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 3, 'pso' => (int) 6, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 12, 'sed' => (int) 6, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 5, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420880' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1